het siRNAsPlant small RNA genesmiRNA

SITE UNDER CONSTRUCTION - BE WARNED, NOT FULLY FUNCTIONAL OR TESTED

Physcomitrella patens genome build 3.0

Species code ppt
Build 3.0
Description Version 3.0 genome build from Phytozome 10 along with plastid and mitochondrial genomes
Download FASTA http://plantsmallrnagenes.science.psu.edu/ppt-b3.0/ppt_v3-0.fasta
Genome browser ppt-b3.0/jbrowse
Homepage ppt-b3.0

Available small RNA-seq alignments

accessionaligned readsunaligned readssource dbis refset? Alignments that are reference sets (value of 1) are mergers of other component libraries used to compile master small RNA annotations for a species.tissueecotype / cultivargenotypereplicate id Alignments that are biological replicates have the same replicate idsrefset id If set, the alignment is part of the indicated reference setdescription
SRR101338923,133,0321,649,617SRA0protonemataGransden 2004dcl3-10dcl3-10dcl3-10 protonemata (Gransden 2004)
SRR101339012,454,093834,155SRA0protonemataGransden 2004dcl3-10dcl3-10dcl3-10 protonemata (Gransden 2004)
SRR101338711,715,5431,076,738SRA0protonemataGransden 2004dcl3-5dcl3-5dcl3-5 protonemata (Gransden 2004)
SRR101338813,020,3391,419,049SRA0protonemataGransden 2004dcl3-5dcl3-5dcl3-5 protonemata (Gransden 2004)
SRR10133918,497,917763,234SRA0protonemataGransden 2004dcl4-1dcl4-1dcl4-1 protonemata (Gransden 2004)
SRR101339216,523,9991,469,279SRA0protonemataGransden 2004dcl4-1dcl4-1dcl4-1 protonemata (Gransden 2004)
SRR1013395_SRR101339940,935,1653,984,185SRA0protonemataGransden 2009mdcl-107mdcl-107mdcl-107 protonemata (Gransden 2009)
SRR1013396_SRR101340026,192,1732,250,284SRA0protonemataGransden 2009mdcl-107mdcl-107mdcl-107 protonemata (Gransden 2009)
SRR1013393_SRR101339726,715,9002,454,159SRA0protonemataGransden 2009mdcl-77mdcl-77mdcl-77 protonemata (Gransden 2009)
SRR1013394_SRR101339824,979,3442,251,650SRA0protonemataGransden 2009mdcl-77mdcl-77mdcl-77 protonemata (Gransden 2009)
SRR101340914,272,6711,792,434SRA0protonemataGransden 2004nrpd1-12nrpd1-12nrpd1_12 protonemata (Gransden 2004)
SRR101341016,195,3001,241,154SRA0protonemataGransden 2004nrpd1-12nrpd1-12nrpd1_12 protonemata (Gransden 2004)
SRR1013401_SRR101340530,210,9973,362,485SRA0protonemataGransden 2004nrpe1b-128nrpe1b-128nrpe1b_128 protonemata (Gransden 2004)
SRR1013402_SRR101340627,604,7712,930,989SRA0protonemataGransden 2004nrpe1b-128nrpe1b-128nrpe1b_128 protonemata (Gransden 2004)
SRR1013411_SRR101341322,793,7671,725,836SRA0protonemataGransden 2004rdr2-1rdr2-1rdr2-1 protonemata (Gransden 2004)
SRR1013412_SRR101341431,045,2592,224,908SRA0protonemataGransden 2004rdr2-1rdr2-1rdr2-1 protonemata (Gransden 2004)
SRR101341516,730,9881,370,312SRA0protonemataGransden 2004rdr2-2rdr2-2rdr2-2 protonemata (Gransden 2004)
SRR101341618,625,8071,620,341SRA0protonemataGransden 2004rdr2-2rdr2-2rdr2-2 protonemata (Gransden 2004)
SRR101341712,918,423918,932SRA0protonemataGransden 2004rdr6-19rdr6-19rdr6-19 protonemata (Gransden 2004)
SRR101341811,173,2921,497,997SRA0protonemataGransden 2004rdr6-19rdr6-19rdr6-19 protonemata (Gransden 2004)
SRR101341913,170,7691,844,516SRA0protonemataGransden 2004rdr6-35rdr6-35rdr6-35 protonemata (Gransden 2004)
SRR101342015,107,0561,665,913SRA0protonemataGransden 2004rdr6-35rdr6-35rdr6-35 protonemata (Gransden 2004)
ppt-b3.0r4132,594,88913,228,723none1protonemataMixed Gransden 2004-2009wild-typerefset44Merge of 6 WT libraries. Reference set 4
SRR768442_SRR94251830,266,9122,713,281SRA0protonemataGransden 2004wild-typewt044wild-type protonemata (Gransden 2004)
SRR768443_SRR94251931,991,5193,067,711SRA0protonemataGransden 2004wild-typewt044wild-type protonemata (Gransden 2004)
SRR94252211,102,4641,272,028SRA0protonemataGransden 2004wild-typewt044wild-type protonemata (Gransden 2004)
SRR94252313,557,8521,887,975SRA0protonemataGransden 2004wild-typewt044wild-type protonemata (Gransden 2004)
SRR768444_SRR94252020,203,8172,289,859SRA0protonemataGransden 2009wild-typewt094wild-type protonemata (Gransden 2009)
SRR768445_SRR94252125,472,3251,997,869SRA0protonemataGransden 2009wild-typewt094wild-type protonemata (Gransden 2009)