het siRNAsPlant small RNA genesmiRNA

SITE UNDER CONSTRUCTION - BE WARNED, NOT FULLY FUNCTIONAL OR TESTED

Amborella trichopoda genome build 1

Species code atr
Build 1
Description Version 1.0 genome from Amborella.org along with plastid and mitochondrial genomes
Download FASTA http://plantsmallrnagenes.science.psu.edu/atr-b1/AmTr_v1.0_pm.fasta
Genome browser atr-b1/jbrowse
Homepage atr-b1

Available small RNA-seq alignments

accessionaligned readsunaligned readssource dbis refset? Alignments that are reference sets (value of 1) are mergers of other component libraries used to compile master small RNA annotations for a species.tissueecotype / cultivargenotypereplicate id Alignments that are biological replicates have the same replicate idsrefset id If set, the alignment is part of the indicated reference setdescription
SRR60685221,244,4712,156,573SRA0female flowerunknownwild-typef_flow2female flower
GSM7124773,616,907520,167GEO0leavesunknownwild-typelf12leaves
SRR60685316,014,3913,428,330SRA0leafunknownwild-typelf22leaf
atr-b1r240,875,7696,105,070none1mixedunknownwild-typerefset22merge of three WT libraries - reference set 2