het siRNAsPlant small RNA genesmiRNA

SITE UNDER CONSTRUCTION - BE WARNED, NOT FULLY FUNCTIONAL OR TESTED

Physcomitrella patens genome build 3.0

Reference set 4

bam filealigned readsunaligned readstissueecotype / cultivargenotypedescription
ppt-b3.0r4132,594,88913,228,723protonemataMixed Gransden 2004-2009wild-typeMerge of 6 WT libraries. Reference set 4

This reference set of small RNA-seq data is the merger of these alignments:

accessionaligned readsunaligned readssource dbtissueecotype / cultivargenotypereplicate id Alignments that are biological replicates have the same replicate idsdescription
SRR768442_SRR94251830,266,9122,713,281SRAprotonemataGransden 2004wild-typewt04wild-type protonemata (Gransden 2004)
SRR768443_SRR94251931,991,5193,067,711SRAprotonemataGransden 2004wild-typewt04wild-type protonemata (Gransden 2004)
SRR768444_SRR94252020,203,8172,289,859SRAprotonemataGransden 2009wild-typewt09wild-type protonemata (Gransden 2009)
SRR768445_SRR94252125,472,3251,997,869SRAprotonemataGransden 2009wild-typewt09wild-type protonemata (Gransden 2009)
SRR94252211,102,4641,272,028SRAprotonemataGransden 2004wild-typewt04wild-type protonemata (Gransden 2004)
SRR94252313,557,8521,887,975SRAprotonemataGransden 2004wild-typewt04wild-type protonemata (Gransden 2004)